Cheques issued to supplier may be
1.Returned or may be lost in mail
2.Not presented and expired for more than 6 months or for some reasons.
You will have void the cheque ( to reverse the accounting entries ) to Debit the bank and Credit the supplier (Increase the amount owing) and at the same time re-issue a new cheque to the supplier
: Returned Cheque given to supplier
At [A/c Entry] , click [Payment]
Assuming the below payment PV000000079 (AP supplier) cheque number OCBC 244544 given to supplier 2 days (or 6 months ago), was returned (or not presented)
At [A/c Entry], click [Receipt]
Record the returned cheque, by Debiting the bank  and Credit Other creditors 
On the next day, when re-bank in , click [Payment]
Click [Pay GL]
To credit the bank  and debit the Other Creditors [Step 6 - F-O003-1] with the same amount [Step 7]
If a new cheque is re-issued, at Step 5 , enter a new cheque number.
At Bank reconciliation, the returned cheque (RC00000042) and re-bank in (PV00000089) will be shown as per below.